---
title: "Getting Started with {fibre}"
output: rmarkdown::html_vignette
vignette: >
  %\VignetteIndexEntry{Getting Started with {fibre}}
  %\VignetteEngine{knitr::rmarkdown}
  %\VignetteEncoding{UTF-8}
---

```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
```

```{r setup}
library(phyf)
library(fibre)
library(dplyr)
```

We start with a phylogeny and some traits we want to model. `{fibre}` uses the `{phyf}` package to keep a phylogeny stored in the phylogenetic flow (`pf`) format along with the data. We will load a premade `pf` object for this example, but later we will see how to make your own `pf` object from a phylogeny stored in as an `ape::phylo` object.

```{r load_data}
vert_bmr
```




