Package: phyf 0.0.0.9000
phyf: Phylogenetic Flow Objects for Easy Manipulation and Modelling of Data on Phylogenetic Trees and Graphs
The {phyf} package implements a tibble and vctrs based object for storing phylogenetic trees along with data. It is fast and flexible and directly produces data structures useful for phylogenetic modelling in the {fibre} package.
Authors:
phyf_0.0.0.9000.tar.gz
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phyf_0.0.0.9000.tgz(r-4.4-any)phyf_0.0.0.9000.tgz(r-4.3-any)
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phyf.pdf |phyf.html✨
phyf/json (API)
# Install 'phyf' in R: |
install.packages('phyf', repos = c('https://rdinnager.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rdinnager/phyf/issues
- avonet - AVONET Bird Trait Data with Phylogeny
- bird_beak_codes - Dataset of latent codes representing bird beak 3D shapes
- ecoregion_ids - Ecoregion IDs
- mammal_biogeo - Terrestrial Mammal Bioegeography Data with Phylogeny
- plant_fungus - Dataset of latent codes representing bird beak 3D shapes
- primate_diet - Primate Diet Diversity and Threat Status Data with Phylogeny
- primate_diet_hierarchy - Primate Diet Items Hierarchy
- primate_diet_refs - Primate Diet Data References
- vert_bmr - Vertebrate Base Metabolic Rates with Phylogeny
Last updated 3 months agofrom:39f1c42a86. Checks:OK: 1 ERROR: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 24 2024 |
R-4.5-win | ERROR | Oct 24 2024 |
R-4.5-linux | ERROR | Oct 24 2024 |
R-4.4-win | ERROR | Oct 24 2024 |
R-4.4-mac | ERROR | Oct 24 2024 |
R-4.3-win | ERROR | Oct 24 2024 |
R-4.3-mac | ERROR | Oct 24 2024 |
Exports:%>%autoplotfortifymake_interppfpf_ancpf_as_pfpf_as_pfcpf_as_pftibblepf_as_phylopf_as_sparsepf_descpf_edge_applypf_edge_namespf_edge_segmentizepf_end_featurespf_endspf_epoch_infopf_filter_with_mrcapf_flow_cumsumpf_flow_sumpf_indexespf_internalpf_internal<-pf_is_descpf_is_emptypf_is_pfcpf_is_pfppf_is_tipspf_kroneckerpf_labelspf_mean_edge_featurespf_mrcapf_nedgespf_nodespf_onespf_pathpf_phyloflowpf_positionpf_row_kronpf_scale_flow_sumpf_second_orderpf_standardisepf_terminalpf_terminal<-pf_tipspf_vcvpf_zerospfcpfc_from_pftibblepfprpfc
Dependencies:apeaplotassertthatclassclassIntcliclusterGenerationcodacodetoolscolorspacecombinatcpp11DBIDEoptimdigestdoParalleldplyre1071expmfansifarverfastmatchfmesherforeachfsgenericsggfunggplot2ggplotifyggtreegluegridGraphicsgtableigraphinlabruisobanditeratorsivsjsonliteKernSmoothlabelinglatticelazyevallifecyclemagrittrmapsMASSMatrixMatrixModelsmgcvmnormtmunsellnlmenumDerivoptimParallelpatchworkphangornphytoolspillarpkgconfigplyrproxypurrrquadprogR6RColorBrewerRcpprlangs2scalesscatterplot3dsfspstringistringrterratibbletidyrtidyselecttidytreetreeiounitsutf8vctrsviridisLitewithrwkyulab.utils